PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00097410001

Common Name

GSBRNA2T00097410001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 365aa MW: 41500.1 Da PI: 6.9868

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00097410001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.1	3.3e-37	102	161	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny++sqPr+fC++C+ryWt GG++r vPvG+grrknk + GSBRNA2T00097410001 102 PDKILPCPRCNSSDTKFCYYNNYNVSQPRHFCRSCQRYWTSGGSMRTVPVGSGRRKNKGW 161 7899*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-30	98	159	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.3E-31	104	159	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.351	106	160	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	108	144	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MSELRDTPVK LFGWTITSSL SSLVLVLKIK LNIFFFSVYH FETSFMMLMS NQSATDDIEQ 60 DSTSLQRSSD LTEESKETSE NSEITTTTTT SEEKTTDDLK KPDKILPCPR CNSSDTKFCY 120 YNNYNVSQPR HFCRSCQRYW TSGGSMRTVP VGSGRRKNKG WVSSDNYMHI KSEDTNSYNS 180 SPAKILSFDS SGEESLVTEN DKNQSSDSVS KKFNKFQRFL PPQVTSSVSP PWPYQYPPNP 240 AFYQIPVYWG CTVPFWSTLQ TCTCLGKRTR DEASHVSVGE NEDTSVRARL DSQSRSNTDE 300 ANVATKNRVF YPLPMEREKT HQFSLFVNGS ETKSGNNRFV PETYLNLQAN PEAMSRSMNF 360 RESM*

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MSELRDTPVK LFGWTITSSL SSLVLVLKIK LNIFFFSVYH FETSFMMLMS NQSATDDIEQ  60
DSTSLQRSSD LTEESKETSE NSEITTTTTT SEEKTTDDLK KPDKILPCPR CNSSDTKFCY  120
YNNYNVSQPR HFCRSCQRYW TSGGSMRTVP VGSGRRKNKG WVSSDNYMHI KSEDTNSYNS  180
SPAKILSFDS SGEESLVTEN DKNQSSDSVS KKFNKFQRFL PPQVTSSVSP PWPYQYPPNP  240
AFYQIPVYWG CTVPFWSTLQ TCTCLGKRTR DEASHVSVGE NEDTSVRARL DSQSRSNTDE  300
ANVATKNRVF YPLPMEREKT HQFSLFVNGS ETKSGNNRFV PETYLNLQAN PEAMSRSMNF  360
RESM*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC006535	6e-88	AC006535.7 Genomic sequence for Arabidopsis thaliana BAC T24P13 from chromosome I, complete sequence.
GenBank	CP002684	6e-88	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013740119.1	0.0	PREDICTED: dof zinc finger protein DOF1.3-like
Swissprot	Q9LQX4	1e-161	DOF13_ARATH; Dof zinc finger protein DOF1.3
TrEMBL	A0A078II90	0.0	A0A078II90_BRANA; BnaC05g50980D protein
STRING	Bra024683.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14082	16	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26790.1	1e-133	Dof family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]